Transcript: lnc-TP53TG3D-2:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3D-2:1 
LNCipedia gene ID: lnc-TP53TG3D-2
Location (hg19): chr16:32141463-32150840
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9378 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000568083.1; RP11-1166P10.9-001; OTTHUMT00000432534.1; NONHSAT141989
Alternative gene names: ENSG00000260544.1; RP11-1166P10.9; OTTHUMG00000176562.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.3613 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3D-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC142381.1-1:1
4.0 lnc-AC142381.1-1:1
4.1 lnc-AC142381.1-1:1
5.0 lnc-AC142381.1-1:1
5.1 lnc-ZNF646-76:1
5.2 lnc-TP53TG3D-2:1