Transcript: lnc-TP53TG3F-38:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3F-38:1 
LNCipedia gene ID: lnc-TP53TG3F-38
Ensembl Gene ID: ENSG00000179755
Ensembl Transcript ID: ENST00000319817
Location (hg19): chr16:34256120-34258600
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2481 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000319817.3
Alternative gene names: ENSG00000179755.3; CTD-2144E22.5; AC135776.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 236.629 coding 
CPAT coding probability 95.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TP53TG3F-38:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTD-2144E22.5.1-38:1
4.1 lnc-CTD-2144E22.5.1-38:1
5.0 lnc-CTD-2144E22.5.1-38:1
5.1 lnc-ZNF646-113:1
5.2 lnc-TP53TG3F-38:1