Transcript: lnc-TPCN2-5:2

Basic information

LNCipedia transcript ID: lnc-TPCN2-5:2 
LNCipedia gene ID: lnc-TPCN2-5
Location (hg19): chr11:68926554-68927220
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 573 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000568942.1; RP11-554A11.9-002; OTTHUMT00000421558.1
Alternative gene names: ENSG00000259799.1; RP11-554A11.9; OTTHUMG00000172974.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.5163 non-coding 
CPAT coding probability 8.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPCN2-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TPCN2-5:2
4.0 lnc-TPCN2-5:2
4.1 lnc-TPCN2-5:2
5.0 lnc-TPCN2-5:2
5.1 lnc-TCIRG1-24:8
5.2 lnc-TPCN2-5:2