Transcript: lnc-TPD52-1:3

Basic information

LNCipedia transcript ID: lnc-TPD52-1:3 
LNCipedia gene ID: lnc-TPD52-1
Ensembl Gene ID: ENSG00000272264
Ensembl Transcript ID: ENST00000607017
Location (hg19): chr8:80944959-80945535
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 577 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607017.1
Alternative gene names: ENSG00000272264.1; RP11-92K15.3; AC009686.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.3431 non-coding 
CPAT coding probability 6.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPD52-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPS28-1:1
4.0 lnc-MRPS28-1:1
4.1 lnc-MRPS28-1:1
5.0 lnc-MRPS28-1:1
5.1 lnc-CPA6-132:1
5.2 lnc-TPD52-1:3