Transcript: lnc-TPP2-2:1

Basic information

LNCipedia transcript ID: lnc-TPP2-2:1 
LNCipedia gene ID: lnc-TPP2-2
Location (hg19): chr13:103331776-103332308
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 533 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT035005; ENST00000602560.1
Alternative gene names: ENSG00000269942.1; RP11-29B2.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -205.859 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPP2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TPP2-2:1
4.0 lnc-TPP2-2:1
4.1 lnc-TPP2-2:1
5.0 lnc-TPP2-2:1
5.1 lnc-COL4A2-66:1
5.2 lnc-TPP2-2:1