Transcript: lnc-TPRA1-4:1

Basic information

LNCipedia transcript ID: lnc-TPRA1-4:1 
LNCipedia gene ID: lnc-TPRA1-4
Location (hg19): chr3:127489412-127495999
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4001 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_2458_chr3:127489411-127495999_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.0487 non-coding 
CPAT coding probability 30.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPRA1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TPRA1-4:1
4.0 lnc-TPRA1-4:1
4.1 lnc-TPRA1-4:1
5.0 lnc-TPRA1-4:1
5.1 lnc-RUVBL1-4:1
5.2 lnc-TPRA1-4:1