Transcript: lnc-TPST1-1:13

Basic information

LNCipedia transcript ID: lnc-TPST1-1:13 
LNCipedia gene ID: lnc-TPST1-1
Location (hg19): chr7:65962312-65963053
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 742 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT121195; FPKM1_group_29820_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.4481 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPST1-1:13 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TPST1-5:1
4.0 lnc-TPST1-5:1
4.1 lnc-TPST1-1:13
5.0 lnc-TPST1-1:13
5.1 lnc-TPST1-8:17
5.2 lnc-TPST1-1:13