Transcript: lnc-TPST1-1:17

Basic information

LNCipedia transcript ID: lnc-TPST1-1:17 
LNCipedia gene ID: lnc-TPST1-1
RefSeq ID: NR_134570
Location (hg19): chr7:65958678-65960461
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 742 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134570.1
Alternative gene names: GS1-124K5.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.0726 non-coding 
CPAT coding probability 7.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPST1-1:17 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-TPST1-8:5
5.1 lnc-TPST1-8:5
5.2 lnc-TPST1-1:17