Transcript: lnc-TPST1-1:4

Basic information

LNCipedia transcript ID: lnc-TPST1-1:4 
LNCipedia gene ID: lnc-TPST1-1
Location (hg19): chr7:65958908-65960583
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 443 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00013490
Alternative gene names: XLOC_006133; linc-KCTD7-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.0726 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPST1-1:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TPST1-1:4
3.1 lnc-TPST1-1:4
4.0 lnc-TPST1-1:4
4.1 lnc-TPST1-1:4
5.0 lnc-TPST1-1:4
5.1 lnc-TPST1-8:14
5.2 lnc-TPST1-1:4