Transcript: lnc-TPTE-13:1

Basic information

LNCipedia transcript ID: lnc-TPTE-13:1 
LNCipedia gene ID: lnc-TPTE-13
Ensembl Gene ID: ENSG00000279321
Ensembl Transcript ID: ENST00000624226
Location (hg19): chr21:10391145-10392741
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 697 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624226.1
Alternative gene names: ENSG00000279321.1; RP11-555K2.4; AC018692.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.9996 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPTE-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CR381653.1-6:1
4.1 lnc-CR381653.1-6:1
5.0 lnc-CR381653.1-6:1
5.1 lnc-OLIG1-172:1
5.2 lnc-TPTE-13:1