Transcript: lnc-TRAF3IP2-7:1

Basic information

LNCipedia transcript ID: lnc-TRAF3IP2-7:1 
LNCipedia gene ID: lnc-TRAF3IP2-7
Location (hg19): chr6:111655663-111687166
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 583 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3232_chr6:111655662-111687135_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -234.7706 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAF3IP2-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAF3IP2-7:1
4.0 lnc-TRAF3IP2-7:1
4.1 lnc-TRAF3IP2-7:1
5.0 lnc-TRAF3IP2-7:1
5.1 lnc-LAMA4-20:1
5.2 lnc-TRAF3IP2-7:1