Transcript: lnc-TRAM1L1-2:1

Basic information

LNCipedia transcript ID: lnc-TRAM1L1-2:1 
LNCipedia gene ID: lnc-TRAM1L1-2
Ensembl Gene ID: ENSG00000250791
Ensembl Transcript ID: ENST00000491608
Location (hg19): chr4:117410520-117436302
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007816; ENST00000491608; ENST00000491608.2; RP11-55L3.1-001; OTTHUMT00000363906.1; NONHSAT097945
Alternative gene names: XLOC_004050; linc-NDST4; ENSG00000250791; RP11-55L3.1; ENSG00000250791.1; OTTHUMG00000161136.1; AC106892.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.3945 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAM1L1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAM1L1-2:1
3.1 lnc-TRAM1L1-2:1
4.0 lnc-TRAM1L1-2:1
4.1 lnc-TRAM1L1-2:1
5.0 lnc-TRAM1L1-2:1
5.1 lnc-PDE5A-22:1
5.2 lnc-TRAM1L1-2:1