Transcript: lnc-TRAM1L1-3:2

Basic information

LNCipedia transcript ID: lnc-TRAM1L1-3:2 
LNCipedia gene ID: lnc-TRAM1L1-3
Location (hg19): chr4:117017447-117218313
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 716 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000509983.1; RP11-659O3.1-001; OTTHUMT00000363908.1; NONHSAT097937
Alternative gene names: ENSG00000248173.1; RP11-659O3.1; OTTHUMG00000161137.1; ENSG00000248173.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.3901 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAM1L1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAM1L1-3:2
4.0 lnc-TRAM1L1-3:2
4.1 lnc-TRAM1L1-3:2
5.0 lnc-TRAM1L1-3:2
5.1 lnc-PDE5A-26:3
5.2 lnc-TRAM1L1-3:2