Transcript: lnc-TRAPPC12-1:5

Basic information

LNCipedia transcript ID: lnc-TRAPPC12-1:5 
LNCipedia gene ID: lnc-TRAPPC12-1
Location (hg19): chr2:3523434-3526024
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1822 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235078.1|ENCT00000219575.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.0951 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAPPC12-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRAPPC12-1:5
5.0 lnc-TRAPPC12-1:5
5.1 lnc-SNX17-261:5
5.2 lnc-TRAPPC12-1:5