Transcript: lnc-TRAPPC6B-2:1

Basic information

LNCipedia transcript ID: lnc-TRAPPC6B-2:1 
LNCipedia gene ID: lnc-TRAPPC6B-2
Ensembl Gene ID: ENSG00000258940
Ensembl Transcript ID: ENST00000553520
Location (hg19): chr14:39735624-39736265
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 467 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553520.1; RP11-407N17.5-001; OTTHUMT00000410314.1; NONHSAT036528
Alternative gene names: ENSG00000258940.1; RP11-407N17.5; OTTHUMG00000170769.1; ENSG00000258940.2; AL132639.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.0619 non-coding 
CPAT coding probability 21.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAPPC6B-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAPPC6B-2:1
4.0 lnc-TRAPPC6B-2:1
4.1 lnc-TRAPPC6B-2:1
5.0 lnc-TRAPPC6B-2:1
5.1 lnc-EFS-194:3
5.2 lnc-TRAPPC6B-2:1