Transcript: lnc-TRAPPC6B-2:4

Basic information

LNCipedia transcript ID: lnc-TRAPPC6B-2:4 
LNCipedia gene ID: lnc-TRAPPC6B-2
Location (hg19): chr14:39735624-39736287
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 489 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000258940.2|ENST00000553520.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -207.0619 non-coding 
CPAT coding probability 13.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAPPC6B-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRAPPC6B-2:4
5.0 lnc-TRAPPC6B-2:4
5.1 lnc-EFS-194:2
5.2 lnc-TRAPPC6B-2:4