Transcript: lnc-TREML1-1:3

Basic information

LNCipedia transcript ID: lnc-TREML1-1:3 
LNCipedia gene ID: lnc-TREML1-1
Location (hg19): chr6:41107594-41108570
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000440573; ENST00000440573.1; RP1-238O23.4-001; OTTHUMT00000040501.1; NONHSAT112722
Alternative gene names: ENSG00000228342; RP1-238O23.4; ENSG00000228342.1; OTTHUMG00000014672.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.1816 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TREML1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TREML1-1:2
3.1 lnc-TREML1-1:3
4.0 lnc-TREML1-1:3
4.1 lnc-TREML1-1:3
5.0 lnc-TREML1-1:3
5.1 lnc-TREML2-4:2
5.2 lnc-TREML1-1:3