Transcript: lnc-TRIB1-1:3

Basic information

LNCipedia transcript ID: lnc-TRIB1-1:3 
LNCipedia gene ID: lnc-TRIB1-1
Location (hg19): chr8:126522445-126523325
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 881 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000253111.1|ENCT00000430148.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.9498 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIB1-1:3 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRIB1-1:3
5.0 lnc-TRIB1-1:3
5.1 lnc-NSMCE2-3:1
5.2 lnc-TRIB1-1:3