Transcript: lnc-TRIB1-2:1

Basic information

LNCipedia transcript ID: lnc-TRIB1-2:1 
LNCipedia gene ID: lnc-TRIB1-2
Location (hg19): chr8:126479045-126485552
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014852; NONHSAT128971
Alternative gene names: XLOC_006918; linc-POU5F1B-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.7361 non-coding 
CPAT coding probability 2.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIB1-2:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIB1-1:1
3.1 lnc-TRIB1-2:1
4.0 lnc-TRIB1-2:1
4.1 lnc-TRIB1-2:1
5.0 lnc-TRIB1-2:1
5.1 lnc-NSMCE2-4:1
5.2 lnc-TRIB1-2:1