Transcript: lnc-TRIB1-4:1

Basic information

LNCipedia transcript ID: lnc-TRIB1-4:1 
LNCipedia gene ID: lnc-TRIB1-4
Ensembl Gene ID: ENSG00000244791
Ensembl Transcript ID: ENST00000500180
RefSeq ID: NR_125421
Location (hg19): chr8:127337740-127341780
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1422 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500180; ENST00000500180.2; RP11-65D17.1-001; OTTHUMT00000381483.1; NONHSAT128994; NR_125421.1
Alternative gene names: ENSG00000244791; RP11-65D17.1; ENSG00000244791.2; OTTHUMG00000165030.1; AC087667.1; LOC101927657


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.2346 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIB1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIB1-4:1
3.1 lnc-TRIB1-4:1
4.0 lnc-TRIB1-4:1
4.1 lnc-TRIB1-4:1
5.0 lnc-TRIB1-4:1
5.1 lnc-NSMCE2-10:2
5.2 lnc-TRIB1-4:1