Transcript: lnc-TRIM11-5:1

Basic information

LNCipedia transcript ID: lnc-TRIM11-5:1 
LNCipedia gene ID: lnc-TRIM11-5
Ensembl Gene ID: ENSG00000270110
Ensembl Transcript ID: ENST00000602778
Location (hg19): chr1:228483612-228490699
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 764 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT010008; ENST00000602778.1
Alternative gene names: ENSG00000270110.1; RP5-1139B12.4; AL353593.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.5843 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM11-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf145-5:1
4.0 lnc-C1orf145-5:1
4.1 lnc-C1orf145-5:1
5.0 lnc-C1orf145-5:1
5.1 lnc-TRIM17-9:1
5.2 lnc-TRIM11-5:1