Transcript: lnc-TRIM16-1:5

Basic information

LNCipedia transcript ID: lnc-TRIM16-1:5 
LNCipedia gene ID: lnc-TRIM16-1
Location (hg19): chr17:15586168-15587625
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 550 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT145847
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.9702 non-coding 
CPAT coding probability 2.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM16-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-385D13.1.1-1:1
4.0 lnc-TRIM16-1:5
4.1 lnc-TRIM16-1:5
5.0 lnc-TRIM16-1:5
5.1 lnc-COPS3-68:1
5.2 lnc-TRIM16-1:5