Transcript: lnc-TRIM16-4:1

Basic information

LNCipedia transcript ID: lnc-TRIM16-4:1 
LNCipedia gene ID: lnc-TRIM16-4
Ensembl Gene ID: ENSG00000265519
Ensembl Transcript ID: ENST00000582780
Location (hg19): chr17:15691101-15691519
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582780.1; CTD-3157E16.1-001; OTTHUMT00000444653.1; NONHSAT145874
Alternative gene names: ENSG00000265519.1; CTD-3157E16.1; OTTHUMG00000179073.1; AC015922.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.6505 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM16-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM16-4:1
4.0 lnc-TRIM16-4:1
4.1 lnc-TRIM16-4:1
5.0 lnc-TRIM16-4:1
5.1 lnc-COPS3-64:1
5.2 lnc-TRIM16-4:1