Transcript: lnc-TRIM26-2:14

Basic information

LNCipedia transcript ID: lnc-TRIM26-2:14 
LNCipedia gene ID: lnc-TRIM26-2
RefSeq ID: NR_102326
Location (hg19): chr6:30255174-30294933
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 8477 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108613; NR_102326; NR_102326.1
Alternative gene names: HCG18


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 2.004 non-coding 
CPAT coding probability 7.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRIM26-2:14 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM26-2:14
4.0 lnc-TRIM26-2:14
4.1 lnc-TRIM26-2:14
5.0 lnc-TRIM26-2:14
5.1 lnc-SFTA2-26:3
5.2 lnc-TRIM26-2:14