Transcript: lnc-TRIM26-2:16

Basic information

LNCipedia transcript ID: lnc-TRIM26-2:16 
HGNC Gene Symbol: lnc-TRIM26-2    
HGNC Full Gene Name: HLA complex group 18
Ensembl Gene ID: ENSG00000231074
Ensembl Transcript ID: ENST00000413358
Location (hg19): chr6:30262184-30294674
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 916 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413358.2; ENST00000413358.6
Alternative gene names: ENSG00000231074.4; HCG18; ENSG00000231074.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -44.607 non-coding 
CPAT coding probability 5.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRIM26-2:16 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM26-2:16
4.0 lnc-TRIM26-2:16
4.1 lnc-TRIM26-2:16
5.0 lnc-TRIM26-2:16
5.1 lnc-SFTA2-26:11
5.2 lnc-TRIM26-2:16