Transcript: lnc-TRIM26-2:34

Basic information

LNCipedia transcript ID: lnc-TRIM26-2:34 
LNCipedia gene ID: lnc-TRIM26-2
Location (hg19): chr6:30245287-30295126
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 13777 bp
Exons: 5
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1191:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 29.8995 non-coding 
CPAT coding probability 22.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM26-2:34 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TRIM26-2:34
4.1 lnc-TRIM26-2:34
5.0 lnc-TRIM26-2:34
5.1 lnc-SFTA2-26:2
5.2 lnc-TRIM26-2:34