Transcript: lnc-TRIM27-15:1

Basic information

LNCipedia transcript ID: lnc-TRIM27-15:1 
LNCipedia gene ID: lnc-TRIM27-15
Location (hg19): chr6:28756565-28757297
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 249 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012134; NONHSAT108484
Alternative gene names: XLOC_005664; linc-SCAND3-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.3953 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM27-15:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIM27-3:1
3.1 lnc-TRIM27-15:1
4.0 lnc-TRIM27-15:1
4.1 lnc-TRIM27-15:1
5.0 lnc-TRIM27-15:1
5.1 lnc-SFTA2-61:1
5.2 lnc-TRIM27-15:1