Transcript: lnc-TRIM29-1:3

Basic information

LNCipedia transcript ID: lnc-TRIM29-1:3 
LNCipedia gene ID: lnc-TRIM29-1
Location (hg19): chr11:120127185-120136641
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 730 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000560146.1; RP11-778O17.4-001; OTTHUMT00000416109.1
Alternative gene names: ENSG00000259541.1; RP11-778O17.4; OTTHUMG00000171955.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.4483 non-coding 
CPAT coding probability 5.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM29-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM29-1:3
4.0 lnc-TRIM29-1:3
4.1 lnc-TRIM29-1:3
5.0 lnc-TRIM29-1:3
5.1 lnc-SLC37A4-43:1
5.2 lnc-TRIM29-1:3