Transcript: lnc-TRIM29-9:10

Basic information

LNCipedia transcript ID: lnc-TRIM29-9:10 
LNCipedia gene ID: lnc-TRIM29-9
Ensembl Gene ID: ENSG00000254863
Ensembl Transcript ID: ENST00000534055
Location (hg19): chr11:119858663-119859543
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 518 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534055; ENST00000534055.1; RP11-831A10.2-003; OTTHUMT00000388009.1; NONHSAT140039
Alternative gene names: ENSG00000254863; RP11-831A10.2; ENSG00000254863.1; OTTHUMG00000166136.1; AP001360.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.6069 non-coding 
CPAT coding probability 5.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM29-9:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-831A10.1.1-1:6
3.1 lnc-RP11-831A10.1.1-1:6
4.0 lnc-RP11-831A10.1.1-1:6
4.1 lnc-RP11-831A10.1.1-1:6
5.0 lnc-RP11-831A10.1.1-1:6
5.1 lnc-SLC37A4-37:10
5.2 lnc-TRIM29-9:10