Transcript: lnc-TRIM29-9:6

Basic information

LNCipedia transcript ID: lnc-TRIM29-9:6 
LNCipedia gene ID: lnc-TRIM29-9
Location (hg19): chr11:119859889-119865400
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 375 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019780; NONHSAT024704
Alternative gene names: XLOC_009578; linc-PVRL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -352.2551 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM29-9:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-831A10.1.1-1:4
3.1 lnc-RP11-831A10.1.1-1:4
4.0 lnc-RP11-831A10.1.1-1:4
4.1 lnc-RP11-831A10.1.1-1:4
5.0 lnc-RP11-831A10.1.1-1:4
5.1 lnc-SLC37A4-37:6
5.2 lnc-TRIM29-9:6