Transcript: lnc-TRIM38-2:3

Basic information

LNCipedia transcript ID: lnc-TRIM38-2:3 
LNCipedia gene ID: lnc-TRIM38-2
Ensembl Gene ID: ENSG00000272462
Ensembl Transcript ID: ENST00000606723
Location (hg19): chr6:25992890-26002003
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4130 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606723.2
Alternative gene names: ENSG00000272462.2; U91328.19; U91328.2; U91328.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.4506 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM38-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM38-1:6
4.0 lnc-TRIM38-1:6
4.1 lnc-HIST1H2BH-2:2
5.0 lnc-HIST1H2BH-2:2
5.1 lnc-CARMIL1-26:2
5.2 lnc-TRIM38-2:3