Transcript: lnc-TRIM38-3:1

Basic information

LNCipedia transcript ID: lnc-TRIM38-3:1 
LNCipedia gene ID: lnc-TRIM38-3
Location (hg19): chr6:25990989-25991454
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 466 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000607586.1
Alternative gene names: ENSG00000272065.1; U91328.20


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.195 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM38-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM38-3:1
4.0 lnc-TRIM38-3:1
4.1 lnc-TRIM38-3:1
5.0 lnc-TRIM38-3:1
5.1 lnc-CARMIL1-15:1
5.2 lnc-TRIM38-3:1