Transcript: lnc-TRIM41-3:18

Basic information

LNCipedia transcript ID: lnc-TRIM41-3:18 
LNCipedia gene ID: lnc-TRIM41-3
Ensembl Gene ID: ENSG00000250900
Ensembl Transcript ID: ENST00000514784
Location (hg19): chr5:180627913-180630103
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 620 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514784.1; CTC-338M12.6-005; OTTHUMT00000371335.1; NONHSAT105885
Alternative gene names: ENSG00000250900.2; CTC-338M12.6; OTTHUMG00000163005.3; ENSG00000250900.6; AC008443.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.3285 non-coding 
CPAT coding probability 2.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM41-3:18 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM41-1:6
4.0 lnc-TRIM41-1:6
4.1 lnc-TRIM41-3:18
5.0 lnc-TRIM41-3:18
5.1 lnc-SQSTM1-31:6
5.2 lnc-TRIM41-3:18