Transcript: lnc-TRIM44-1:1

Basic information

LNCipedia transcript ID: lnc-TRIM44-1:1 
LNCipedia gene ID: lnc-TRIM44-1
Location (hg19): chr11:35677775-35682887
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 802 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000525573; ENST00000525573.1; RP1-276E15.1-001; OTTHUMT00000389080.1; NONHSAT018795
Alternative gene names: ENSG00000254686; RP1-276E15.1; ENSG00000254686.1; OTTHUMG00000166311.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.682 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM44-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIM44-1:1
3.1 lnc-TRIM44-1:1
4.0 lnc-TRIM44-1:1
4.1 lnc-TRIM44-1:1
5.0 lnc-TRIM44-1:1
5.1 lnc-CAPRIN1-27:1
5.2 lnc-TRIM44-1:1