Transcript: lnc-TRIM49-5:1

Basic information

LNCipedia transcript ID: lnc-TRIM49-5:1 
LNCipedia gene ID: lnc-TRIM49-5
Location (hg19): chr11:89176589-89224562
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1309 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT023553
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1158.1283 coding 
CPAT coding probability 46.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRIM49-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GRM5-1:2
4.0 lnc-TRIM49-5:1
4.1 lnc-TRIM49-5:1
5.0 lnc-TRIM49-5:1
5.1 lnc-CREBZF-32:1
5.2 lnc-TRIM49-5:1