Transcript: lnc-TRPC4AP-1:2

Basic information

LNCipedia transcript ID: lnc-TRPC4AP-1:2 
LNCipedia gene ID: lnc-TRPC4AP-1
Location (hg19): chr20:33576778-33578801
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1926 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT079464
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 120.4374 coding 
CPAT coding probability 22.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRPC4AP-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPC4AP-1:2
4.0 lnc-TRPC4AP-1:2
4.1 lnc-TRPC4AP-1:2
5.0 lnc-TRPC4AP-1:2
5.1 lnc-MMP24OS-11:2
5.2 lnc-TRPC4AP-1:2