Transcript: lnc-TRPV2-4:5

Basic information

LNCipedia transcript ID: lnc-TRPV2-4:5 
LNCipedia gene ID: lnc-TRPV2-4
Location (hg19): chr17:16439196-16447387
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5428 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000030828.1|ENCT00000172489.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 28.9085 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPV2-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRPV2-4:5
5.0 lnc-TRPV2-4:5
5.1 lnc-GLP2R-80:4
5.2 lnc-TRPV2-4:5