Transcript: lnc-TSHZ1-1:4

Basic information

LNCipedia transcript ID: lnc-TSHZ1-1:4 
LNCipedia gene ID: lnc-TSHZ1-1
Location (hg19): chr18:72883090-72892096
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026643
Alternative gene names: XLOC_012720; linc-TSHZ1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.8779 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSHZ1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSHZ1-1:4
3.1 lnc-TSHZ1-1:4
4.0 lnc-TSHZ1-1:4
4.1 lnc-TSHZ1-1:4
5.0 lnc-TSHZ1-1:4
5.1 lnc-KCNG2-43:4
5.2 lnc-TSHZ1-1:4