Transcript: lnc-TSHZ2-11:3

Basic information

LNCipedia transcript ID: lnc-TSHZ2-11:3 
LNCipedia gene ID: lnc-TSHZ2-11
Location (hg19): chr20:52352887-52353343
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000053680.1|FTMT28000002574.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -481.0074 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSHZ2-11:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TSHZ2-11:3
5.0 lnc-TSHZ2-11:3
5.1 lnc-MC3R-36:1
5.2 lnc-TSHZ2-11:3