Transcript: lnc-TSHZ2-19:2

Basic information

LNCipedia transcript ID: lnc-TSHZ2-19:2 
LNCipedia gene ID: lnc-TSHZ2-19
Location (hg19): chr20:52463253-52468982
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1950 bp
Exons: 5
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT080405; FPKM1_group_19530_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.0996 non-coding 
CPAT coding probability 8.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSHZ2-19:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSHZ2-4:3
4.0 lnc-PFDN4-7:2
4.1 lnc-PFDN4-7:2
5.0 lnc-PFDN4-7:2
5.1 lnc-MC3R-34:2
5.2 lnc-TSHZ2-19:2