Transcript: lnc-TSR3-2:2

Basic information

LNCipedia transcript ID: lnc-TSR3-2:2 
LNCipedia gene ID: lnc-TSR3-2
Ensembl Gene ID: ENSG00000274751
Ensembl Transcript ID: ENST00000339021
Location (hg19): chr16:1355548-1359414
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3867 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000339021.4
Alternative gene names: ENSG00000274751.1; LA16c-358B7.4; AC120498.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -14.5793 non-coding 
CPAT coding probability 16.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSR3-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C16orf42-2:2
4.1 lnc-C16orf42-2:2
5.0 lnc-C16orf42-2:2
5.1 lnc-PKMYT1-93:2
5.2 lnc-TSR3-2:2