Transcript: lnc-TSSC4-2:2

Basic information

LNCipedia transcript ID: lnc-TSSC4-2:2 
LNCipedia gene ID: lnc-TSSC4-2
Location (hg19): chr11:2397430-2398419
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 406 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019824; NONHSAT017512
Alternative gene names: XLOC_009027; linc-CD81-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.4845 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSSC4-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSSC4-1:2
3.1 lnc-TSSC4-2:2
4.0 lnc-TSSC4-2:2
4.1 lnc-TSSC4-2:2
5.0 lnc-TSSC4-2:2
5.1 lnc-OR51M1-73:2
5.2 lnc-TSSC4-2:2