Transcript: lnc-TSTA3-1:5

Basic information

LNCipedia transcript ID: lnc-TSTA3-1:5 
LNCipedia gene ID: lnc-TSTA3-1
Location (hg19): chr8:144695545-144706618
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 244 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3713_chr8:144695544-144706618_lymphNode
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 6.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSTA3-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PYCRL-1:1
4.0 lnc-TSTA3-1:5
4.1 lnc-TSTA3-1:5
5.0 lnc-TSTA3-1:5
5.1 lnc-TMEM249-51:1
5.2 lnc-TSTA3-1:5