Transcript: lnc-TTC39A-2:1

Basic information

LNCipedia transcript ID: lnc-TTC39A-2:1 
LNCipedia gene ID: lnc-TTC39A-2
Ensembl Gene ID: ENSG00000236434
Ensembl Transcript ID: ENST00000422306
Location (hg19): chr1:51730588-51731746
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 435 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT003190; ENST00000422306.2
Alternative gene names: ENSG00000236434.2; RP11-296A18.6; AL162430.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.9623 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC39A-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC39A-2:1
4.0 lnc-TTC39A-2:1
4.1 lnc-TTC39A-2:1
5.0 lnc-TTC39A-2:1
5.1 lnc-TXNDC12-11:1
5.2 lnc-TTC39A-2:1