Transcript: lnc-TTK-1:1

Basic information

LNCipedia transcript ID: lnc-TTK-1:1 
LNCipedia gene ID: lnc-TTK-1
Ensembl Gene ID: ENSG00000233835
Ensembl Transcript ID: ENST00000436418
Location (hg19): chr6:80581590-80584327
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 325 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011331; ENST00000436418; ENST00000436418.1; RP1-92C4.2-001; OTTHUMT00000041312.1; NONHSAT113716
Alternative gene names: XLOC_005362; linc-TTK; ENSG00000233835; RP1-92C4.2; ENSG00000233835.1; OTTHUMG00000015084.1; AL132875.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.8363 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTK-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTK-1:1
3.1 lnc-TTK-1:1
4.0 lnc-TTK-1:1
4.1 lnc-TTK-1:1
5.0 lnc-TTK-1:1
5.1 lnc-CYB5R4-37:1
5.2 lnc-TTK-1:1