Transcript: lnc-TTPA-1:6

Basic information

LNCipedia transcript ID: lnc-TTPA-1:6 
LNCipedia gene ID: lnc-TTPA-1
Ensembl Gene ID: ENSG00000253205
Ensembl Transcript ID: ENST00000521221
Location (hg19): chr8:64297397-64330488
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1762 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00014519; ENST00000521221; ENST00000521221.1; CTD-3046C4.1-001; OTTHUMT00000378589.1; NONHSAT126931; ENST00000521221.5
Alternative gene names: XLOC_007100; linc-TTPA-2; ENSG00000253205; CTD-3046C4.1; ENSG00000253205.1; OTTHUMG00000164394.1; ENSG00000253205.5; AC011124.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.8435 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTPA-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTPA-1:6
3.1 lnc-TTPA-1:6
4.0 lnc-TTPA-1:6
4.1 lnc-TTPA-1:6
5.0 lnc-TTPA-1:6
5.1 lnc-CPA6-72:6
5.2 lnc-TTPA-1:6