Transcript: lnc-TUBA3C-1:1

Basic information

LNCipedia transcript ID: lnc-TUBA3C-1:1 
LNCipedia gene ID: lnc-TUBA3C-1
Ensembl Gene ID: ENSG00000232243
Ensembl Transcript ID: ENST00000437057
Location (hg19): chr13:19836937-19838013
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 400 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437057; ENST00000437057.1; RP11-408E5.5-001; OTTHUMT00000044002.1; NONHSAT032264
Alternative gene names: ENSG00000232243; RP11-408E5.5; ENSG00000232243.1; OTTHUMG00000016478.1; AL139327.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.2202 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUBA3C-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TUBA3C-1:1
3.1 lnc-TUBA3C-1:1
4.0 lnc-TUBA3C-1:1
4.1 lnc-TUBA3C-1:1
5.0 lnc-TUBA3C-1:1
5.1 lnc-ZDHHC20-45:1
5.2 lnc-TUBA3C-1:1