Transcript: lnc-TUBB1-1:4

Basic information

LNCipedia transcript ID: lnc-TUBB1-1:4 
LNCipedia gene ID: lnc-TUBB1-1
Location (hg19): chr20:57721183-57734733
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 274 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028579; NONHSAT080614
Alternative gene names: XLOC_013588; linc-ZNF831


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.1876 non-coding 
CPAT coding probability 4.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUBB1-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF831-1:1
3.1 lnc-ZNF831-1:1
4.0 lnc-ZNF831-1:1
4.1 lnc-ZNF831-1:1
5.0 lnc-ZNF831-1:1
5.1 lnc-GNAS-8:3
5.2 lnc-TUBB1-1:4