Transcript: lnc-TUBGCP6-4:1

Basic information

LNCipedia transcript ID: lnc-TUBGCP6-4:1 
LNCipedia gene ID: lnc-TUBGCP6-4
Ensembl Gene ID: ENSG00000272836
Ensembl Transcript ID: ENST00000610050
Location (hg19): chr22:50644014-50644491
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 478 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610050.1
Alternative gene names: ENSG00000272836.1; RP3-402G11.27; AL022328.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.8729 non-coding 
CPAT coding probability 9.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUBGCP6-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TUBGCP6-4:1
4.0 lnc-TUBGCP6-4:1
4.1 lnc-TUBGCP6-4:1
5.0 lnc-TUBGCP6-4:1
5.1 lnc-HDAC10-4:1
5.2 lnc-TUBGCP6-4:1