Transcript: lnc-TVP23C-4:1

Basic information

LNCipedia transcript ID: lnc-TVP23C-4:1 
LNCipedia gene ID: lnc-TVP23C-4
Location (hg19): chr17:15369845-15372023
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2179 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000582225.1; RP11-726O12.3-001; OTTHUMT00000443716.1; NONHSAT145818
Alternative gene names: ENSG00000264762.1; RP11-726O12.3; OTTHUMG00000178872.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.1239 non-coding 
CPAT coding probability 7.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TVP23C-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC005838.1-4:1
4.0 lnc-AC005838.1-4:1
4.1 lnc-AC005838.1-4:1
5.0 lnc-AC005838.1-4:1
5.1 lnc-COPS3-73:1
5.2 lnc-TVP23C-4:1